Software and Websites used at the Workshop

Websites

• FUMA
• Atlas of GWAS summary statistics
• UCSC Genome Browser
• LiftOver
• Hail
• LocusZoom
• LDLink
• Genetics Power Calculator
• MRbase

Software

• bcftools
• plink
• SAIGE
• BoltLMM
• gcta
• ldsc
• MAGMA
• mtag
• eigenstrat
• smartpca
• METAL
• easyQC
• R packages, which are mostly available in cran (install.packages("qqman"), for example)
  • markdown
  • qqman
  • OpenMx
  • gee
  • qvalue
  • GWASTools
  • sem
  • GenomicSEM
  • easyQC