Workshop 2025 files for download

Downloading files

The files used in the practicals and presentations are available for browsing and download at https://ibg.colorado.edu/cdrom2025/.

All of the practical files can be downloaded in a single zip file, and data in second zip file. The practicals zip file is about 1.6GB in size and expands to 3.4GB when unzipped; the data zip file is about 1.4GB and expands to 4.8GB.

Participants in the 2025 course were sent an email with a unique link to download their personal files.

Software used at the Workshop

• R and RStudio
  • Instructions for downloading and installing R are available on the R-Project home page.
  • RStudio is available from Posit. The Workshop used the free version of RStudio.
  • Listed below are the R libraries which were used. Most can be installed by running install.package("library-name") in R, but some need to be installed directly from github.
    • AER
    • coloc
    • corrplot
    • data.table
    • dplyr
    • EnsDb.Hsapiens.v75 (part of Bioconductor)
    • GenomicSEM (on github at https://github.com/GenomicSEM/GenomicSEM)
    • ggplot2
    • locuszoomr
    • MatrixEQTL
    • rcompanion
    • stringr
    • SusieR
    • tidyr
• Jupyter notebook
  • HAIL
  • R, Python, and more can be run under Jupyter
• plink
• plink2
• gcta
• gctb
• SAIGE
• METAL
• MAGMA