Journal Publications

  1. Kieran Fung, Shouhong Fan, Thomas J. Kolibaba, Benjamin W. Caplins, Jason P. Killgore, Xiaoyun Ding, Yifu Ding. (2024). 3D Printed Helmholtz Microstreaming Structures: Analysis of Bubble Dynamics, Bulk Fluid Disturbance, and Resiliency in Nonquiescent Conditions. ACS ES&T Water, 4(4), 1741–1750.
  2. Leqian Yu, Deirdre Logsdon, Carlos A. Pinzon-Arteaga, Jialei Duan, Toshihiko Ezashi, Yulei Wei, Ana Elisa Ribeiro Orsi, Seiya Oura, Lizhong Liu, Lei Wang, Kun Liu, Xiaoyun Ding, Linfeng Zhan, Junfei Zhang, Asrafun Nahar, Caitlen Stobbe, Mandy Katz-Jaffe, William B. Schoolcraft, Tao Tan, Gary C. Hon, Ye Yuan, Jun Wu. Large-Scale Production of Human Blastoids Amenable to Modeling Blastocyst Development and Maternal-Fetal Cross Talk. Cell Stem Cell 2023, 30 (9), 1246-1261.e9.
  3. Leyla Akh, Diane Jung, William Frant, Corrin Bowman, Anika C. Neu, Xiaoyun Ding. Microfluidic Pumps for Cell Sorting. Biomicrofluidics 2023, 17 (5), 051502.
  4. Joyita Bhadra, Nakul Sridhar, Apresio Kefin Fajrial, Nia Hammond, Ding Xue, and Xiaoyun Ding, Acoustic Streaming Enabled Moderate Swimming Exercise Reduces Neurodegeneration in C. elegans, Science Advances, 2023, 9 (8), eadf5056.
  5. Anish Silwal, Awaneesh Upadhyay, Gazendra Shakya, Marco Inzunza-Ibarra, Todd Murray, Xiaoyun Ding, and Mark A. Borden. Photoacoustic Vaporization of Endoskeletal Droplets Loaded with Zinc Naphthalocyanine. Langmuir, 2023, 39 (1), 168-176.
  6. Jaylene Martinez, Shouhong Fan, Salil Rabade, Adrienne K. Blevins, Kieran Fung, Jason P. Killgore, Stefano Berti Perez, Kathy Youngbear, Christina Carbrello, Sean Foley, Xiaoyun Ding, Rong Long, Yifu Ding. Capillary Infiltration Kinetics in Highly Asymmetric Porous Membranes and the Resulting Debonding Behaviors. Polymer, 2022. (https://doi.org/10.1016/j.polymer.2022.125529.)
  7. Nakul Sridhar, Apresio Kefin Fajrial, Rachel Doser, Frederic Hoerndli, and Xiaoyun Ding. Surface Acoustic Wave Microfluidics for Repetitive and Reversible Temporary Immobilization of C. Elegans. Lab on a Chip, 2022. (https://doi.org/10.1039/D2LC00737A)
  8. Yu Gao, Kun Liu, Richard Lakerveld, and Xiaoyun Ding. Staged Assembly of Colloids Using DNA and Acoustofluidics. Nano Lett, 2022, 22, 6907–6915.
  9. Gazendra Shakya, Tao Yang, Yu Gao, Apresio K. Fajrial, Baowen Li, Massimo Ruzzene, Mark A. Borden, and Xiaoyun Ding. Acoustically manipulating internal structure of disk-in-sphere endoskeletal droplets. Nature Communications, 2022,13, 1: 1-9. (https://www.nature.com/articles/s41467-022-28574-4)
  10. Kieran Fung, Yuekang Li, Shouhong Fan, Apresio Kefin Fajrial, Yifu Ding, and Xiaoyun Ding. Acoustically excited microstructure for on-demand fouling mitigation in a microfluidic membrane filtration device. Journal of Membrane Science Letters, (2022), 2, 1, 100012.
  11. Gazendra Shakya, Apresio K. Fajrial, Xiaoyun Ding, and Mark A. Borden. Effect of Thermal History and Hydrocarbon Core Size on Perfluorocarbon Endoskeletal Droplet Vaporization. Langmuir (2022).
  12. Fajrial, Apresio K., Adam Vega, Gazendra Shakya, and Xiaoyun Ding. A frugal microfluidic pump. Lab on a Chip, 2021, 21, 4772-4778. (https://pubs.rsc.org/en/content/articlehtml/2021/lc/d1lc00691f) (Back Cover image story) 
  13. Kaitlin P. McCreery, Xin Xu, Adrienne K. Scott, Apresio K. Fajrial, Sarah Calve, Xiaoyun Ding, and Corey P. Neu. Nuclear Stiffness Decreases with Disruption of the Extracellular Matrix in Living Tissues. Small (2021) (https://onlinelibrary.wiley.com/doi/abs/10.1002/smll.202006699)
  14. Yu Gao, Apresio K. Fajrial, Tao Yang and  Xiaoyun Ding. Emerging on-chip surface acoustic wave technology for small biomaterials manipulation and characterization. Biomaterials Science, 2021,9, 1574-1582 (https://pubs.rsc.org/en/content/articlelanding/2021/BM/D0BM01269F) (Back Cover image story) 
  15. Apresio K. Fajrial, Kun Liu, Yu Gao, Junhao Gu, Richard Lakerveld, and Xiaoyun Ding. Characterization of Single-Cell Osmotic Swelling Dynamics for New Physical Biomarkers. Analytical Chemistry 2021, 93, 3, 1317–1325 (https://pubs.acs.org/doi/abs/10.1021/acs.analchem.0c02289) (Front Cover image story) 
  16. Yonghui Ding, Kerri A. Ball, Kristofor J. Webb, Yu Gao, Angelo D'Alessandro, William M. Old, Michael H. B. Stowell, Xiaoyun Ding. On‐Chip Acousto Thermal Shift Assay for Rapid and Sensitive Assessment of Protein Thermodynamic Stability. Small (2020): 2003506. (https://onlinelibrary.wiley.com/doi/abs/10.1002/smll.202003506) (Front Cover Story) 
  17. Apresio Kefin Fajrial, Qing Qing He, Nurul I. Wirusanti, Jill Slansky, and Xiaoyun Ding. A review of emerging physical transfection methods for CRISPR/Cas9-mediated gene editing. Theranostics 2020; 10(12):5532-5549. doi:10.7150/thno.43465. (http://www.thno.org/v10p5532.htm) 
  18. Gazendra Shakya, Samuel E. Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding and Mark A. Borden. Vaporizable endoskeletal droplets via tunable interfacial melting transitions. Science Advances 6.14 (2020): eaaz7188. DOI: 10.1126/sciadv.aaz7188
  19. Yonghui Ding, Richard Johnson, Sadhana Sharma, Xiaoyun Ding, Stephanie J. Bryant, and Wei Tan. "Tethering transforming growth factor β1 to soft hydrogels guides vascular smooth muscle commitment from human mesenchymal stem cells." Acta Biomaterialia 105 (2020): 68-77.. (https://doi.org/10.1016/j.actbio.2020.01.034)
  20. Michael Miles, Biddut Bhattacharjee, Nakul Sridhar, Apresio Kefin Fajrial, Kerri Ball, Yung Cheng Lee, Michael HB Stowell, William M. Old, and Xiaoyun Ding. Flattening of Diluted Species Profile via Passive Geometry in a Microfluidic Device. Micromachines 10, no. 12 (2019): 839.
  21. Apresio Kefin Fajrial, and Xiaoyun Ding. Advanced nanostructures for cell membrane poration. Nanotechnology (2019). https://doi.org/10.1088/1361-6528/ab096b (PDF)
  22. Xiaoyun Ding, Martin Stewart, Armon Sharei, James Weaver, Robert Langer, and Klavs Jensen. High-throughput nuclear delivery and rapid expression of DNA via mechanical and electrical cell-membrane disruption. Nature Biomedical Engineering, 1, 0039 (2017) http://dx.doi.org/10.1038/s41551-017-0039
  23. Martin P Stewart, Armon Sharei, Xiaoyun Ding, Gaurav Sahay, Robert Langer, Klavs F Jensen. In vitro and ex vivo strategies for intracellular delivery. Nature 538 (7624), 183-192 (2016) http://dx.doi.org/10.1038/nature19764
  24. Sixing Li, Xiaoyun Ding, Zhangming Mao, Yuchao Chen, Nitesh Nama, Feng Guo, Peng Li, Lin Wang, Craig E. Cameron and Tony Jun Huang, Standing surface acoustic wave (SSAW)-based cell washing, Lab on a Chip, 15, 331-338 (2015).
  25. Xiaoyun Ding, Zhangli Peng, Sz-Chin Steven Lin, Michela Geri, Sixing Li, Peng Li, Yuchao Chen, Ming Dao, Subra Suresh, and Tony Jun Huang, Cell separation using tilted-angle standing surface acoustic waves, Proceedings of the National Academy of Sciences of the United States of America (PNAS), 111, 12992-12997 (2014). http://dx.doi.org/10.1073/pnas.1413325111
  26. Sixing Li, Feng Guo, Yuchao Chen, Xiaoyun Ding, Peng Li, Lin Wang, Craig E Cameron, Tony Jun Huang, Standing Surface Acoustic Wave Based Cell Coculture, Analytical Chemistry, 86, 9853-9859 (2014). https://dx.doi.org/10.1021%2Fac502453z
  27. Yuchao Chen, Sixing Li, Yeyi Gu, Peng Li, Xiaoyun Ding, Lin Wang, J Philip McCoy, Stewart J Levine, Tony Jun Huang, Continuous enrichment of low-abundance cell samples using standing surface acoustic waves (SSAW), Lab on a Chip, 14, 924-930 (2014). https://dx.doi.org/10.1039%2Fc3lc51001h
  28. Xiaoyun Ding, Peng Li, Sz-Chin Steven Lin, Zackary S. Stratton, Nitesh Nama, Feng Guo, Daniel Slotcavage, Xiaole Mao, Francesco Costanzo, and Tony Jun Huang, Surface acoustic wave (SAW) microfluidics, Lab on a Chip, 13, 3626-3649 (2013). https://doi.org/10.1039/C3LC50361E
  29. Chung Yu Chan, Po-Hsun Huang, Feng Guo, Xiaoyun Ding, Vivek Kapur, John D. Mai, Po Ki Yuen, and Tony Jun Huang, Accelerating drug discovery via organs-on-chips, Lab on a Chip, 13, 4697-4710 (2013). 
  30. Sixing Li, Xiaoyun Ding, Feng Guo, Yuchao Chen, Michael Ian Lapsley, Sz-Chin Steven Lin, and Tony Jun Huang, “Microfluidic Droplet Sorting via Standing Surface Acoustic Wave”, Analytical Chemistry, 85, 5468-5474 (2013). https://doi.org/10.1039/c4lc00903g
  31. Yuchao Chen, Xiaoyun Ding, Sz-Chin Steven Lin, and Tony Jun Huang, Tunable Nanowire Patterning Using Standing Surface Acoustic Waves (SSAW), ACS Nano, 7, 3306-3314 (2013). 
  32. Xiaoyun Ding, Sz-Chin Steven Lin, Brian Kiraly, Hongjun Yue, Sixing Li, Jinjie Shi, Stephen J. Benkovic, and Tony Jun Huang, On-Chip Manipulation of Single Microparticles, Cells, and Organisms Using Surface Acoustic Waves, Proceedings of the National Academy of Sciences of the United States of America (PNAS), 109, 11105-11109 (2012).
  33. Xiaoyun Ding, Sz-Chin Steven Lin, Michael Ian Lapsley, Sixing Li, Xiang Guo, Chung Yu Chan, I-Kao Chiang, J. Philip McCoy, and Tony Jun Huang, Standing surface acoustic wave (SSAW) based multichannel cell sorting, Lab on a Chip, 12, 4228–4231 (2012). (Cover image) 
  34. Xiaoyun Ding, Jinjie Shi, Sz-Chin Steven Lin, Shahrzad Yazdi, Brian Kiraly, and Tony Jun Huang, Tunable Patterning of Microparticles and Cells using Standing Surface Acoustic Waves, Lab on a Chip, 12, 2491-2497 (2012). (Cover image)
  35. Yan Jun Liu, Mengqian Lu, Xiaoyun Ding, Eunice S. P. Leong, Sz-Chin Steven Lin, Jinjie Shi, Jing Hua Teng, Lin Wang, Timothy J. Bunning, and Tony Jun Huang, Holographically Formed, Acoustically Switchable Gratings based on Polymer-Dispersed Liquid Crystals, Journal of Laboratory Automation, 18, 291-295 (2012).
  36. Jiajie Tang, Xiaoyun Ding, Fei Geng, Xiaowei Sun, Le Luo, Wafer-level multilayer integration of RF passives with thick BCB/metal interlayer connection in silicon-based SiP, Microsystem Technologies, 18, 119-126 (2012).
  37.  Yan Jun Liu, Xiaoyun Ding, Sz-Chin Steven Lin, Jinjie Shi, I-Kao Chiang, and Tony Jun Huang, Surface Acoustic Wave Driven Light Shutters Using Polymer-Dispersed Liquid Crystals, Advanced Materials, 23, 1656-1659 (2011). (Cover image)
  38. Michael Ian Lapsley, I-Kao Chiang, Yue Bing Zheng, Xiaoyun Ding, Xiaole Mao, and Tony Jun Huang, A Single-Layer, Planar, Optofluidic Mach-Zehnder Interferometer for Label-Free Detection, Lab on a Chip, 11, 1795–1800 (2011).  
  39. Jinjie Shi, Shahrzad Yazdi, Sz-Chin Steven Lin, Xiaoyun Ding, I-Kao Chiang, Kendra Sharp, and Tony Jun Huang, Three-Dimensional Continuous Particle Focusing in a Microfluidic Channel via Standing Surface Acoustic Waves (SSAW), Lab on a Chip, 11, 2319-2324 (2011). (Cover image)
  40. Xiaoyun Ding, Fei Geng, and Le Luo, Process development in metal/BCB multilayer interconnections of MMCM with embedded chip in Si substrate, Microelectronic Engineering, 86 (3), 335-339 (2009).
  41. Xiaoyun Ding, Fei Geng, and Le Luo, Wideband vertical transitions for multilayer BCB-based MCM, Microwave and Optical Technology Letters, 51 (6), 1584-1587 (2009).
  42. Fei Geng, Xiaoyun Ding, Gaowei Xu, and Le Luo, A wafer-scale packaging structure with monolithic microwave integrated circuits and passives embedded in a silicon substrate for multichip modules for radio frequency applications, Journal of Micromechanics and Microengineering, 19, 105011 (2009).
  43. Fei Geng, Xiaoyun Ding, Gaowei Xu ,and Luo Le, A wafer-level 3D packaging structure with Benzocyclobutene as a dielectric for multichip module fabrication, Journal of Semiconductors, 30, 106003 (2009).

Conference Presentations (Since 2017)

  1. Nakul Sridhar, Frederic J. Hoerndli, Xiaoyun Ding, "Reversible C. Elegans Immobilization with Surface Acoustic Waves (SAW)". MicroTAS 2021, Palm Springs, CA, USA,10/2021. (Poster)
  2. Nakul Sridhar, Joyita Bhadra, Ding Xue, Xiaoyun Ding, "Surface Acoustic Wave (SAW) Microfluidic Device to Induce Controllable Swimming Exercise in C. Elegans". MicroTAS 2021, Palm Springs, CA, USA, 10/2021. (Poster)
  3. Gazendra Shakya, Tao Yang, Apresio K. Fajrial, Yu Gao, Mark Borden, and Xiaoyun Ding, “Effects of primary and secondary radiation forces on endoskeletal droplets under standing surface acoustic waves”. The 26th European Symposium on Ultrasound contrast Imaging, Rotterdam, The Netherlands, 01/2021. (Oral Presentation)
  4. Apresio K. Fajrial, Kun Liu, Yu Gao, and Xiaoyun Ding, "Microfluidic Hanging Pillars Arrays for Single-Cell Analysis of Osmotic Swelling Dynamics as Physical Biomarkers" 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2020, 10/2020. (Oral Presentation)
  5. Gazendra Shakya, Samuel Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding, and Mark Borden, “Tunable Vaporization Threshold in Endoskeletal Droplets via Interfacial Melting Transitions”. 2020 BMES Virtual Annual Meeting, USA, 10/2020. (Oral Presentation)
  6. Gazendra Shakya, Samuel Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding, and Mark Borden, “Tuning vaporization threshold by interfacial melting in endoskeletal and exoskeletal perfluoropentane droplets”. 2020 ACS Colloids and Surface Science Virtual Symposium, USA, 06/2020. (Oral Presentation)
  7. Gazendra Shakya, Samuel Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding, and Mark Borden, “Tuning vaporization thresholds of perfluorocarbon by interfacial melting in endoskeletal droplets”. University of Colorado APS Symposium, Boulder, CO, USA 03/2020. (Oral Presentation)
  8. Gazendra Shakya, Samuel Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding, and Mark Borden, “Tuning vaporization by interfacial melting in endoskeletal and exoskeletal droplets”. The 26th European Symposium on Ultrasound Contrast Imaging, Rotterdam, The Netherlands, 01/2020. (Poster Presentation)
  9. Gazendra Shakya, Samuel Hoff, Shiyi Wang, Hendrik Heinz, Xiaoyun Ding, and Mark Borden, “Tuning vaporization thresholds of endoskeletal perfluorocarbon droplets” IEEE International Ultrasonics Symposium, Glasgow, Scotland, United Kingdom, 10/2019. (Oral Presentation)
  10. Xin Xu, Apresio Fajrial, Benjamin Seelbinder, Xiaoyun Ding, Sarah Calve, and Corey Neu, “Probing the interplay of nuclear, cellular, and matrix mechanics within living tissues” 8th World Congress of Biomechanics, Dublin, Ireland, United Kingdom, 10/2018. (Oral Presentation)
  11. Xiaoyun Ding, “Standing Surface Acoustic Wave Enabled Acoustofluidics for Bioparticle Manipulation” 174th meeting of the Acoustical Society of America, New Orleans, LA, USA, 12/2017. (Invited Talk)
  12. Xiaoyun Ding, Martin Stewart, Robert Langer, and Klavs Jensen, “Reversible Disruption of Nuclear Envelope via Mechanical and Electrical Pulse” 2nd World Congress on Electroporation, Norfolk, VA, USA, 09/2017. (Invited Talk)

Book Chapter

  1. Yu Gao, Yuekang Li, and Xiaoyun Ding. "Acoustofluidic technology for cell biophysics." in Micro and Nano Systems for Biophysical Studies of Cells and Small Organisms, X. Liu and Y. Sun, Academic Press, 2021. 153-171.
  2. Xiaoyun Ding, Peng Li, Sz-Chin Steven Lin, Zackary S. Stratton, Nitesh Nama, Feng Guo, Daniel Slotcavage, Xiaole Mao, Jinjie Shi,  Francesco Costanzo, Thomas Franke, Achim Wixforth, and Tony Jun Huang, “Lab-on-a-chip Technologies Enabled by Surface Acoustic Waves”, in Microscale Acoustofluidics, A. Lenshof, and T. Laurell, Royal Society of Chemistry Publisher, 2014, pp. 354-398.