Boulder School 2007: Lecture Notes
Boulder School 2007: Lecture Notes
All files are in PDF format.
Monday, July 2 | |
| Bialek & Gregor | Physics Problems in Early Embryonic Development Lectures I-II [Link] |
| Kondev | Lectures I-III [PDF] (for all lectures) Construction Plans for Cells and Organisms Lecture Notes 1 [PDF] |
Tuesday, July 3 | |
| Nelson | Biopolymers Lecture I [Graphics] [Text] |
| Kondev | Lecture II (see link on day 1) Life's Processes: Stopwatches at Many Scales Lecture Notes 2 [PDF] |
| Betterton | Molecular Motors - Lecture I [Powerpoint] or [PDF] Lecture Notes 1 [PDF] |
Thursday, July 5 | |
| Nelson | Maximum Likelihood Methods Lecture II [PDF] |
| Kondev | Lecture III (see link on day 1) Rods, Ropes and Chromosomes Lecture Notes 3 [1] and [2] |
| Betterton | Molecular Motors - Lecture II Lecture Notes 2 [PDF] |
Friday, July 6 | |
| Gregor | Physics Problems in Early Embryonic Development Lecture III (see link on day 1) |
| Nelson | Maximum Likelihood Methods Lecture III [PDF] |
| Wiggins | Bayesian Statistics Tutorial |
Monday, July 9 | |
| Bialek | Noise and Fluctuations Tutorial |
| Setayeshgar | Biological Applications of the Physics of Diffusion Lecture I [PDF] Lecture 1 references [PDF] |
| Wingreen | Life at Low Reynolds Number and Bacterial Chemotaxis Lecture I [Powerpoint] or [PDF] |
Tuesday, July 10 | |
| Wingreen | Bacterial Chemotaxis Signaling Network as a Model System Lecture II [Powerpoint] or [PDF] |
| Sengupta | Nonlinear Dynamics Tutorial [PDF] |
| Bialek | Ion Channels and Neural Dynamics Tutorial |
Wednesday, July 11 | |
| Wingreen | Biophysical Aspects of Bacterial Geometry Lecture III [Powerpoint] or [PDF] |
| Swain | Modeling Stochastic Gene Expression Lecture I [Powerpoint] or [PDF] (for all lectures) |
| Goldman | Linear Networks and How Neurons Do Integrals Lecture I [Powerpoint] or [PDF] Handwritten Notes [PDF] |
Thursday, July 12 | |
| Tyson | Network Dynamics and Cell Physiology Lecture I [Powerpoint] or [PDF] |
| Swain | Measuring Stochastic Gene Expression Lecture II (see links on Wednesday, July 11) |
| Shraiman | Modeling Signal Transduction Networks, Part I Lecture I [Powerpoint] or [PDF] |
Friday, July 13 | |
| Tyson | Lessons from Modeling the Eukaryotic Cell Cycle Lecture II (see links on Thursday, July 12) |
| Goldman | Robustness in Neural Networks Lecture II [Powerpoint] or [PDF] |
| Shraiman | Modeling Signal Transduction Networks, Part II Lecture II [Powerpoint] or [PDF] |
Monday, July 16 | |
| Wiggins | Gene Expression Data Lecture I [PDF] |
| Chklovskii | Reconstruction of Brain Circuits Using Electron Microscopy Lecture I [PDF] |
| Seung | Algorithms for Neural Circuit Reconstruction Lecture I [Powerpoint] or [PDF] |
Tuesday, July 17 | |
| Wiggins | How to Combine Motif-Related Information to Explain Gene Expression Lecture II (see link on Monday, July 16) |
| Seung | Neuroeconomics Lecture II Isee link on Monday, July 16) |
| Chklovskii | Anatomy and Principles of Brain Design Lecture II [PDF] |
Wednesday, July 18 | |
| Seung | Synaptic Basis of Reinforcement Learning Lecture III [Powerpoint] or [PDF] |
| Chklovskii | Lecture III (see link on Tuesday, July 17) |
| Bialek | More perfect than we imagined: A physicist's view of life Public Lecture |
Thursday, July 19 | |
| Callan | What Physics-Inspired Bioinformatics Can Teach Us About Transcription Factor Binding and Evolution, Part I Lecture I [PDF] |
| Desai | Stochastic Dynamics in Simple Models of Evolution, Part I Lecture I [Link] |
Friday, July 20 | |
| Callan | What Physics-Inspired Bioinformatics Can Teach Us About Transcription Factor Binding and Evolution, Part II Lecture II [PDF] |
| Desai | Stochastic Dynamics in Simple Models of Evolution, Part II Lecture II (see link on Thursday, July 19) |
| Fairhall | Neural Adaptation to the Statistical Structure of the Environment Lecture [Powerpoint] or [PDF] |
Monday, July 23 | |
| Kruglyak | Genetic Basis of Phenotypic Variation, Part I Lecture I [Powerpoint] or [PDF] |
| Coller | Coordinating Cell Division with Growth Lecture I [Powerpoint] or [PDF] |
| Shaevitz | Direct Observation of Dynamics in Transcription at the Single Molecule Level Lecture I [PDF] |
Tuesday, July 24 | |
| Kruglyak | Genetric Basis of Phenotypic Variation, Part II Lecture II [Powerpoint] or [PDF] |
| Coller | A Brief History of the Cell Cycle Lecture II [Powerpoint] or [PDF] |
| Shaevitz | Experimental Techniques in Small Scale Manipulation of Biological Systems Lecture II [PDF] |
Wednesday, July 25 | |
| Sharpee | Information theory and adaptive neural filtering |
| Samadani | Cellular Individuality in the Chemotactic Response of Dictyostelium Lecture I [Powerpoint] or [PDF] |
| Tanase-Nicola | Genetic Switching |
Thursday, July 26 | |
| Linden & Chen | Molecular Motors |
| Samadani | Cellular Individuality in the DNA Repair Mechanism Lecture II [Powerpoint] or [PDF] |