• McClure-Begley, T. D., Ebmeier, C. C., Ball, K. E., Jacobsen, J. R., Kogut, I., Bilousova, G., Klymkowsky, M. K., and Old, W. M. (2018) Cerebral organoid proteomics reveals signatures of dysregulated cortical development associated with human trisomy 21. bioRxiv
  • Stabell, A. C., Meyerson, N. R., Gullberg, R. C., Gilchrist, A. R., Webb, K. J., Old, W. M., Perera, R., and Sawyer, S. L. (2018) Dengue viruses cleave STING in humans but not in nonhuman primates, their presumed natural reservoir. eLife 7
  • Basken, J., Stuart, S. A., Kavran, A. J., Lee, T., Ebmeier, C. C., Old, W. M., and Ahn, N. G. (2018) Specificity of Phosphorylation Responses to Mitogen Activated Protein (MAP) Kinase Pathway Inhibitors in Melanoma Cells. Molecular & cellular proteomics : MCP 17, 550-564
  • Ebmeier, C. C., Erickson, B., Allen, B. L., Allen, M. A., Kim, H., Fong, N., Jacobsen, J. R., Liang, K., Shilatifard, A., Dowell, R. D., Old, W. M., Bentley, D. L., and Taatjes, D. J. (2017) Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications. Cell reports 20, 1173-1186
  • Adams, D. J., Nemkov, T. G., Mayer, J. P., Old, W. M., and Stowell, M. H. B. (2017) Identification of the primary peptide contaminant that inhibits fibrillation and toxicity in synthetic amyloid-beta 42. PloS one 12
  • Carrieri, D., Lombardi, T., Paddock, T., Cano, M., Goodney, G. A., Nag, A., Old, W., Maness, P. C., Seibert, M., Ghirardi, M., and Yu, J. P. (2017) Transcriptome and proteome analysis of nitrogen starvation responses in Synechocystis 6803 Delta glgC, a mutant incapable of glycogen storage. Algal Research-Biomass Biofuels and Bioproducts 21, 64-75
  • Ball, K., Pisconti, A., Grounds, K., Old, W., and Stowell, M. (2017) Unexpected Early Proteomic Changes in Alzheimer's Disease Model Mice Synaptosomes. bioRxiv
  • Adams, D. J., Nemkov, T. G., Mayer, J. P., Old, W. M., and Stowell, M. H. B. (2017) Identification of the primary peptide contaminant that inhibits fibrillation and toxicity in synthetic amyloid-beta 42. PloS one 12
  • Poss, Z. C., Ebmeier, C. C., Odell, A. T., Tangpeerachaikul, A., Lee, T., Pelish, H. E., Shair, M. D., Dowell, R. D., Old, W. M., and Taatjes, D. J. (2016) Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics. Cell reports 15, 436-450
  • Kershner, J. P., Yu McLoughlin, S., Kim, J., Morgenthaler, A., Ebmeier, C. C., Old, W. M., and Copley, S. D. (2016) A Synonymous Mutation Upstream of the Gene Encoding a Weak-link Enzyme Causes an Ultrasensitive Response in Growth Rate. Journal of bacteriology
  • Brown, R., Stuart, S. S., Houel, S., Ahn, N. G., and Old, W. M. (2015) Large-Scale Examination of Factors Influencing Phosphopeptide Neutral Loss during Collision Induced Dissociation. Journal of the American Society for Mass Spectrometry 26, 1128-1142
  • Stuart, S. A., Houel, S., Lee, T., Wang, N., Old, W. M., and Ahn, N. G. (2015) A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells. Molecular & cellular proteomics : MCP 14, 1599-1615
  • Volkov, V. A., Grissom, P. M., Arzhanik, V. K., Zaytsev, A. V., Renganathan, K., McClure-Begley, T., Old, W. M., Ahn, N., and McIntosh, J. R. (2015) Centromere protein F includes two sites that couple efficiently to depolymerizing microtubules. JOURNAL OF CELL BIOLOGY 209, 813-828
  • Long J, Tokhunts R, Old WM , Houel S, Rodgriguez-Blanco J, Singh S, Schilling N, Capobianco AJ, Ahn NG, Robbins DJ. Identification of a family of Fatty-Acid-speciated sonic hedgehog proteins, whose members display differential biological properties. Cell Rep. 2015 Mar 3;10(8):1280-7. doi: 10.1016/j.celrep.2015.01.058. Epub 2015 Feb 26.
  • Nichols CM, Old WM , Lineberger WC, Bierbaum VM. Gas-phase acidities of nitrated azoles as determined by the extended kinetic method and computations. J Phys Chem A. 2015 Jan 15;119(2):395-402. doi: 10.1021/jp5110533. Epub 2014 Dec 31.
  • Lee T, Wang N, Houel S, Couts K, Old W, Ahn N.,Dosage and temporal thresholds in microRNA proteomics. Mol Cell Proteomics. 2015 Feb;14(2):289-302. doi: 10.1074/mcp.M114.043851. Epub 2014 Dec 2.
  • Avena JS, Burns S, Yu Z, Ebmeier CC, Old WM , Jaspersen SL, Winey M. Licensing of yeast centrosome duplication requires phosphoregulation of sfi1. PLoS Genet. 2014 Oct;10(10):e1004666. doi: 10.1371/journal.pgen.1004666.
  • Marholz LJ, Chang L, Old WM , Wang X. Development of substrate-selective probes for affinity pulldown of histone demethylases. ACS Chem Biol. 2015 Jan 16;10(1):129-37. doi: 10.1021/cb5006867. Epub 2014 Oct 29.
  • Subramanian V, Dubini A, Astling DP, Laurens LM, Old WM , Grossman AR, Posewitz MC, Seibert M.,Profiling Chlamydomonas metabolism under dark, anoxic H2-producing conditions using a combined proteomic, transcriptomic, and metabolomic approach. J Proteome Res. 2014 Dec 5;13(12):5431-51. doi: 10.1021/pr500342j. Epub 2014 Oct 21.
  • Peden EA, Boehm M, Mulder DW, Davis R, Old WM , King PW, Ghirardi ML, Dubini A.,Identification of global ferredoxin interaction networks in Chlamydomonas reinhardtii. J Biol Chem. 2013 Dec 6;288(49):35192-209. doi: 10.1074/jbc.M113.483727. Epub 2013 Oct 7.
  • Ponicsan SL, Houel S, Old WM , Ahn NG, Goodrich JA, Kugel JF. The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II. J Mol Biol. 2013 Oct 9;425(19):3625-38. doi: 10.1016/j.jmb.2013.01.035. Epub 2013 Feb 8.
  • Meyer-Arendt K, Old WM , Houel S, Renganathan K, Eichelberger B, Resing KA, Ahn NG. IsoformResolver: A peptide-centric algorithm for protein inference. J Proteome Res. 2011 Jul 1;10(7):3060-75. doi: 10.1021/pr200039p. Epub 2011 Jun 7.
  • Yen CY, Houel S, Ahn NG, Old WM . Spectrum-to-spectrum searching using a proteome-wide spectral library. Mol Cell Proteomics. 2011 Jul;10(7):M111.007666. doi: 10.1074/mcp.M111.007666. Epub 2011 Apr 30.
  • Chatterjea SM, Resing KA, Old W, Nirunsuksiri W, Fleckman P. Optimization of filaggrin expression and processing in cultured rat keratinocytes. J Dermatol Sci. 2011 Jan;61(1):51-9. doi: 10.1016/j.jdermsci.2010.11.003. Epub 2010 Nov 13.
  • Houel S, Abernathy R, Renganathan K, Meyer-Arendt K, Ahn NG, Old WM . Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies. J Proteome Res. 2010 Aug 6;9(8):4152-60. doi: 10.1021/pr1003856.
  • Old WM , Shabb JB, Houel S, Wang H, Couts KL, Yen CY, Litman ES, Croy CH, Meyer-Arendt K, Miranda JG, Brown RA, Witze ES, Schweppe RE, Resing KA, Ahn NG. Functional proteomics identifies targets of phosphorylation by B-Raf signaling in melanoma. Mol Cell. 2009 Apr 10;34(1):115-31. doi: 10.1016/j.molcel.2009.03.007.
  • Holinger EP, Old WM , Giddings TH Jr, Wong C, Yates JR 3rd, Winey M. Budding yeast centrosome duplication requires stabilization of Spc29 via Mps1-mediated phosphorylation. J Biol Chem. 2009 May 8;284(19):12949-55. doi: 10.1074/jbc.M900088200. Epub 2009 Mar 5.
  • Wang W, Yang Y, Gao Y, Xu Q, Wang F, Zhu S, Old W, Resing K, Ahn N, Lei M, Liu X.,Structural and mechanistic insights into Mps1 kinase activation. J Cell Mol Med. 2009 Aug;13(8B):1679-94. doi: 10.1111/j.1582-4934.2008.00605.x.
  • Yen CY, Meyer-Arendt K, Eichelberger B, Sun S, Houel S, Old WM , Knight R, Ahn NG, Hunter LE, Resing KA. A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins. Mol Cell Proteomics. 2009 Apr;8(4):857-69. doi: 10.1074/mcp.M800384-MCP200. Epub 2008 Dec 22.
  • Xu Q, Zhu S, Wang W, Zhang X, Old W, Ahn N, Liu X. Regulation of kinetochore recruitment of two essential mitotic spindle checkpoint proteins by Mps1 phosphorylation. Mol Biol Cell. 2009 Jan;20(1):10-20. doi: 10.1091/mbc.E08-03-0324. Epub 2008 Oct 15.
  • Witze ES, Old WM , Resing KA, Ahn NG.,Mapping protein post-translational modifications with mass spectrometry. Nat Methods. 2007 Oct;4(10):798-806.
  • Mattison CP, Old WM , Steiner E, Huneycutt BJ, Resing KA, Ahn NG, Winey M.,Mps1 activation loop autophosphorylation enhances kinase activity. J Biol Chem. 2007 Oct 19;282(42):30553-61. Epub 2007 Aug 28.
  • Ahn NG, Shabb JB, Old WM , Resing KA.,Achieving in-depth proteomics profiling by mass spectrometry. ACS Chem Biol. 2007 Jan 23;2(1):39-52. Review.
  • Sun S, Meyer-Arendt K, Eichelberger B, Brown R, Yen CY, Old WM , Pierce K, Cios KJ, Ahn NG, Resing KA. Improved validation of peptide MS/MS assignments using spectral intensity prediction. Mol Cell Proteomics. 2007 Jan;6(1):1-17. Epub 2006 Oct 2.
  • Ruth MC, Old WM , Emrick MA, Meyer-Arendt K, Aveline-Wolf LD, Pierce KG, Mendoza AM, Sevinsky JR, Hamady M, Knight RD, Resing KA, Ahn NG. Analysis of membrane proteins from human chronic myelogenous leukemia cells: comparison of extraction methods for multidimensional LC-MS/MS. J Proteome Res. 2006 Mar;5(3):709-19.
  • Old WM , Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol Cell Proteomics. 2005 Oct;4(10):1487-502. Epub 2005 Jun 23.
  • Russell SA, Old W, Resing KA, Hunter L. Proteomic informatics. Int Rev Neurobiol. 2004;61:127-57.
  • Resing KA, Meyer-Arendt K, Mendoza AM, Aveline-Wolf LD, Jonscher KR, Pierce KG, Old WM , Cheung HT, Russell S, Wattawa JL, Goehle GR, Knight RD, Ahn NG.,Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics. Anal Chem. 2004 Jul 1;76(13):3556-68.
  • Pacheco TR, Bellus GA, Oreskovich NM, Talbert J, Old W, Fain PR. Exclusion of candidate genes and loci for multiple lentigines syndrome. J Invest Dermatol. 2002 Aug;119(2):535-8. No abstract available.
  • Alkhateeb A, Stetler GL, Old W, Talbert J, Uhlhorn C, Taylor M, Fox A, Miller C, Dills DG, Ridgway EC, Bennett DC, Fain PR, Spritz RA. Mapping of an autoimmunity susceptibility locus (AIS1) to chromosome 1p31.3-p32.2. Hum Mol Genet. 2002 Mar 15;11(6):661-7.
  • Thulin, C. D., Savage, J. R., McLaughlin, J. N., Truscott, S. M., Old, W. M., Ahn, N. G., Resing, K. A., Hamm, H. E., Bitensky, M. W., and Willardson, B. M. (2001) Modulation of the G protein regulator phosducin by Ca2+/calmodulin-dependent protein kinase II phosphorylation and 14-3-3 protein binding. The Journal of biological chemistry 276, 23805-23815