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Selected Publications Kentaro K. Shimizu, Rie Shimizu-Inatsugi, Takashi Tsuchimatsu, and Michael D. Purugganan. 2008. Independent origins of self-compatibility in Arabidopsis thaliana. Molecular Ecology 17(2): 704-714 abstract | full text | article in pdf format Kristie A. Mather, Ana L. Caicedo, Nicholas R. Polato, Kenneth M. Olsen, Susan McCouch, and Michael D. Purugganan. 2007. The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics 177(4): 2223-2232 abstract | full text | article in pdf format Daisuke Saisho and Michael D. Puruggananl. 2007. Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics 177 (3): 1765-1776 NOV 2007 abstract | full text | article in pdf format A. Lawton-Rauh, R. H. Robichaux, and Michael. D. Purugganan. 2007. Diversity and divergence patterns in regulatory genes suggest differential gene flow in recently derived species of the Hawaiian silversword alliance adaptive radiation (Asteraceae). Molecular Ecology 16 (19): 3995-4013 OCT abstract | full text | article in pdf format Ana L. Caicedo, Scott H. Williamson, Ryan D. Hernandez, Adam Boyko, Adi Fledel-Alon, Thomas L. York, Nicholas R. Polato, Kenneth M. Olsen, Rasmus Nielsen, Susan R. McCouch, Carlos D. Bustamante, and Michael D. Purugganan. 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genetics 3 (9): 1745-1756 SEP | full text | article in pdf format Megan C. Hall, Ian Dworkin, Mark C. Ungerer, and Michael Purugganan. Genetics of microenvironmental canalization in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, USA 104 (34): 13717-13722 AUG 21 abstract | full text | article in pdf format Ian M. Ehrenreich, Phillip A. Stafford, and Michael D. Purugganan. 2007. The genetic architecture of shoot branching in Arabidopsis thaliana: A comparative assessment of candidate gene associations vs. quantitative trait locus mapping. Genetics 176 (2): 1223-1236 JUN abstract | full text | article in pdf format Tonia M. Korves, Karl J. Schmid, Ana L. Caicedo, Charlotte Mays, John R. Stinchcombe, Michael D Purugganan, and Johanna Schmitt. 2007. Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. American Naturalist 169 (5): E141-E157 abstract | full text | article in pdf format Chuanzhu Fan, Qiu-Yun (Jenny) Xiang, David L. Remington, Michael D. Purugganan, and Brian M. Wiegmann. 2007. Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae). Genetica 130 (1): 19-34 MAY abstract | article in pdf format Kathleen Engelmann and Michael Purugganan. 2006. The molecular evolutionary ecology of plant development: Flowering time in Arabidopsis thaliana. Advances in Botanical Research 44: 507-526 abstract Tian Tang, Jian Lu, Jianzi Huang, Jinghong He, Susan R. McCouch, Yang Shen, Zeng Kai, Michael D. Purugganan, Suhua Shi and Chung-I Wu. 2006. Genomic variation in rice: Genesis of highly polymorphic linkage blocks during domestication. Public Library of Science Genetics 2 (11): 1824-1833 NOV abstract| article in pdf format Ian M. Ehrenreich and Michael D. Purugganan. 2006. The molecular genetic basis of plant adaptation. American Journal of Botany 93 (7): 953-962 JUL abstract | full text | article in pdf format Kenneth M. Olsen, Ana L. Caicedo, Nicholas Polato, Anna McClung, Susan McCouch and Michael D. Purugganan. 2006. Selection under domestication: Evidence for a sweep in the rice Waxy genomic region. Genetics173 (2): 975-983 JUN abstract | full text | article in pdf format Scott Jackson, Steve Rounsley, and Michael Purugganan. 2006. Comparative sequencing of plant genomes: Choices to make. The Plant Cell. 18 (5): 1100-1104 MAY abstract | article in pdf format K. Shimizu and M. Purugganan. 2006. Evolutionary and ecological genomics - Darwinian selection on a selfing locus in Arabidopsis thaliana. Plant and Cell Physiology. 47: S13-S13 Suppl. Available from Ingenta with a subscription. Scott R. Miller, Michael D. Purugganan, and Stephanie E. Curtis. 2006. Molecular population genetics and phenotypic diversification of two populations of the thermophilic cyanobacterium Mastigocladus laminosus. Applied and Environmental Microbiology. 72 (4): 2793-2800 APR abstract | full text | article in pdf format John R. Stinchcombe, Ana L. Caicedo, Robin Hopkins, Charlotte Mays, Elizabeth W. Boyd, Michael D. Purugganan, and Johanna Schmitt. 2005. Vernalization sensitivity in Arabidopsis thaliana (brassicaceae): The effects of latitude and FLC variation. American Journal of Botany 92(10): 1701-1707. abstract | full text article | article in pdf format Jennifer M. Cork, and Michael D. Purugganan. 2005. High-diversity genes in the Arabidopsis genome. Genetics 170(4): 1897-1911. abstract | full text article | article in pdf format Ana L. Caicedo, and Michael D. Purugganan. 2005. Comparative plant genomics. Frontiers and prospects. Plant Physiology 138(2): 545-547. full text article | article in pdf format Kentaro K. Shimizu, and Michael D. Purugganan. 2005. Evolutionary and ecological genomics of Arabidopsis. Plant Physiology 138(2): 578-584. full text article | article in pdf format Richard C. Moore, and Michael D. Purugganan. 2005. The evolutionary dynamics of plant duplicate genes. Current Opinion in Plant Biology 8(2): 122-128. abstract (full text article and pdf available from ScienceDirect at this link) Richard C. Moore, Sarah
R. Grant, and Michael D. Purugganan.
2005. Molecular population genetics of redundant floral-regulatory
genes in Arabidopsis thaliana.
Molecular Biology and Evolution 22(1): 91-103. abstract | full
text article | article in pdf format Ana L. Caicedo, John R. Stinchcombe, Kenneth M. Olsen, Johanna Schmitt, and Michael D. Purugganan. 2004. Epistatic interaction between Arabidopsis FRI and FLC flowering time genes generates a latitudinal cline in a life history trait. Proceedings of the National Academy of Sciences, USA 101(44): 15670-15675. abstract | full text article | article in pdf format William
E. Friedman, Richard C. Moore,
and Michael D. Purugganan.
2004. The evolution of plant development Kenneth M. Olsen, Solveig S. Halldorsdottir, John R. Stinchcombe, Cynthia Weinig, Johanna Schmitt, and Michael D. Purugganan. 2004. Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles. Genetics 167(3): 1361-1369. abstract | full text article | article in pdf format Susan Kalisz, and Michael D. Purugganan. 2004. Epialleles via DNA methylation: consequences for plant evolution. Trends in Ecology and Evolution 19(6): 309-314. abstract (full text article and pdf available from Science Direct at this link) Jennifer M. Cork, and Michael D. Purugganan. 2004. The evolution of molecular genetic pathways and networks. BioEssays 26(5): 479-484. abstract | article in pdf format John R. Stinchcombe, Cynthia Weinig, Mark Ungerer, Kenneth M. Olsen, Charlotte Mays, Solveig S. Halldorsdottir, Michael D. Purugganan, and Johanna Schmitt. 2004. A latitudinal cline in flowering time in Arabidopsis thaliana modulated by the flowering time gene FRIGIDA. Proceedings of the National Academy of Sciences, USA 101(13): 4712-4717. abstract | full text article | article in pdf format | supplementary material Richard C. Moore, and Michael D. Purugganan. 2003. The early stages of duplicate gene evolution. Proceedings of the National Academy of Sciences, USA 100(26): 15682-15687. abstract | full text article | article in pdf format | supplementary material Cynthia Weinig, Lisa A. Dorn, Nolan C. Kane, Zachary M. German, Solveig S. Hahdorsdottir, Mark C. Ungerer, Yuko Toyonaga, Trudy F.C. Mackay, Michael D. Purugganan, and Johanna Schmitt. 2003. Heterogeneous selection at specific loci in natural environments in Arabidopsis thaliana. Genetics 165(1): 321-329. abstract | full text article | article in pdf format David L. Remington, and Michael D. Purugganan. 2003. Candidate genes, quantitative trait loci, and functional trait evolution in plants. International Journal of Plant Sciences 164(3): S7-S20 Suppl. S. abstract | full text article | article in pdf format Jia Hua Xie, Todd C. Wehner, Kurt Wollenberg, Michael D. Purugganan, and Mark A. Conkling. 2003. Intron and polypeptide evolution of conserved NPA to NPA motif regions in plant aquaporins. Journal of the American Society for Horticultural Science 128(4): 591-597. abstract | article in pdf format Michael D. Purugganan, and Greg Gibson. 2003. Merging ecology, molecular evolution, and functional genetics. Molecular Ecology 12(5): 1109-1112. abstract | full text article | article in pdf format Amy Lawton-Rauh, Robert H. Robichaux, and Michael D. Purugganan. 2003. Patterns of nucleotide variation in homoeologous regulatory genes in the allotetraploid Hawaiian silversword alliance (Asteraceae). Molecular Ecology 12(5): 1301- 1313. abstract | full text article | article in pdf format Cynthia Weinig, Mark C. Ungerer, Lisa A. Dorn, Nolan C. Kane, Yuko Toyonaga, Solveig S. Halldorsdottir, Trudy F.C. Mackay, Michael D. Purugganan, and Johanna Schmitt. 2002. Novel loci control variation in reproductive timing in Arabidopsis thaliana in natural environments. Genetics 162(4): 1875-1884. abstract | full text article | article in pdf format Kenneth M. Olsen, and Michael D. Purugganan. 2002. Molecular evidence on the origin and evolution of glutinous rice. Genetics 162(2): 941-950. abstract | full text article | article in pdf format David L. Remington, and Michael D. Purugganan. 2002. GAI homologues in the Hawaiian silversword alliance (Asteraceae-Madiinae): molecular evolution of growth regulators in a rapidly diversifying plant lineage. Molecular Biology and Evolution 19(9): 1563-1574. abstract | full text article | article in pdf format Robert B. Jackson, C. Randal Linder, Michael Lynch, Michael D. Purugganan, Shauna Somerville, and Susan S. Thayer. 2002. Linking molecular insight and ecological research. Trends in Ecology and Evolution 17(9): 409-414. abstract (full text and pdf available from ScienceDirect at this link) Kenneth M. Olsen, Andrew Womack, Ashley R. Garret, Jane I. Suddith, and Michael D. Purugganan. 2002. Contrasting evolutionary forces in the Arabidopsis floral developmental pathway. Genetics 160(4): 1641-1650. abstract | full text article | article in pdf format Carlos D. Bustamante, Rasmus Nielsen, Stanley A. Sawyer, Kenneth M. Olsen, Michael D. Purugganan, and Daniel L. Hartl. 2002. The cost of inbreeding in Arabidopsis. Nature 416(6880): 531-534. full text article | article in pdf format Mark C. Ungerer, Solveig S. Halldorsdottir, Jennifer Modliszewski, Trudy F.C. Mackay, and Michael D. Purugganan. 2002. Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics 160(3): 1133-1151. abstract | full text article | article in pdf format Kristen A. Shepard, and Michael D. Purugganan. 2002. The genetics of plant morphological evolution. Current Opinion in Plant Biology 5(1): 49-55. abstract (full text and pdf available from ScienceDirect at this link) David L. Remington, Mark C. Ungerer, and Michael D. Purugganan. 2001. Map-based cloning of quantitative trait loci: progress and prospects. Genetical Research 78(3): 213-218. abstract | article in pdf format Marianne Barrier, Robert H. Robichaux, and Michael D. Purugganan. 2001. Accelerated regulatory gene evolution in a plant adaptive radiation. Proceedings of the National Academy of Sciences, USA 98(18): 10208-10213. abstract | full text article | article in pdf format | supplementary information Michael D. Purugganan. 2000. The molecular population genetics of regulatory genes. Molecular Ecology 9(10): 1451-1461. abstract | full text article | article in pdf format
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