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    Awards

*       NIH Biopharmaceutical Engineering Training Grant Fellowship, 2002-2004 (J. Bonomo)

*       National Science Foundation Fellowship, Summer 2002 - Fall 2005 (S. Ziesman)

*       National Institutes of Health Fellowship, Summer 2003- Summer 2006 (M. Lynch)

*       Subaru Educator Spotlight Awards, 2004 (R.T. Gill)

*       GAANN, 2004-2005 (J. Bonomo, J. Prior, J. Struble)

*       NSF CAREER Award, 2005-2009 (R.T. Gill)

*       NIH K25 CAREER development award, 2005-2009 (R.T. Gill)

*       GAANN, 2005-2006 (J. Prior, J. Struble, T. Warnecke)

 

Publications

  1. Gill, R.T.*, Wildt, S., Ziesman, S. and Stephanopoulos, G. 2002. Genome wide screening for trait conferring genes using DNA micro-arrays. Proceedings of the National Academy of Sciences.99:10:7033-7038

  2. Gill, R.T.* 2003. Enabling Inverse Metabolic Engineering through Genomics. Current Opinions in Biotechnology. 14:5:484-490.

  3. Lynch, M., Gill, R.T.*, and Stephanopoulos, G. 2004. Mini-Review: Mapping phenotypic landscapes using DNA micro-arrays. Metabolic Engineering. 6:177-185.

  4. Gill, R.T.* and Dodge, T. 2004. Foreword to the Special issue on inverse metabolic engineering. 6:175-176. (was Guest editor of edition)

  5. Bonomo, J. and Gill, R.T.* 2004. Metabolic engineering: Applying systems biology to a clinically relevant problem. Computers and Chemical Engineering. In-Press.

  6. Dai, M., Ziesman, S., Ratcliffe, T. , Gill, R.T.*, and Copley, S.C*. 2004. Visualization and Quantification of protoplast fusion in Escherichia coli. Metabolic Engineering. In press.

  7. Bonomo, J. and Gill, R.T.* 2004. Amino-acid content of recombinant proteins influences the metabolic burden response. Biotechnology and Bioengineering. In-press. Data

  8. Warnecke, T., Gill, R.T.* 2005. Organic acid toxicity, tolerance, and production in Escherichia coli biorefining applications.  Microbial Cell Factories. 4:25.

  9. Bonomo, J, Warnecke, T, Hume, P, Marizcurrena, A, and Gill, RT.*  (Accepted Dec. 2005) A comparative study of metabolic engineering anti-metabolite tolerance in Escherichia coli.  Metabolic Engineering.

  10. Leiske, D.L., Karimpour-fard, A, Hume, P, Fairbanks, B, Gill, R.T.*  A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray.  Submitted to BMC Genomics Nov. 2005.

  11. Bonomo, J, Lynch, MD, Price, JV, and Gill, RT*. A Genome-Wide Comparative Study of Genes Conferring Increased Tolerance to Aspartic Acid Anti-Metabolites.  In preparation

     

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Presentations

  1. Spring, 2004. International Burkholderia cepacia working group annual meeting. Vancouver, B.C., Canada.

  2. Summer, 2004. Cystic Fibrosis Foundation Williamsburg Conference.

  3. Fall, 2004.        Metabolic Engineering V. Lake Tahoe, CA. (Poster)

  4. Fall, 2004. Cystic Fibrosis Foundation National Conference. St. Louis, MO. (Poster).

  5. Summer, 2005. Society for Industrial Microbiology National Meeting. Chicago, IL

  6. Spring, 2004. American Chemical Society (ACS) National Meeting. Anaheim, CA. Restoring sensitivity in antibiotic resistant bacteria. Poster presentation. Struble, J. and Gill, R.T.

  7. Spring, 2004. ACS National Meeting. Anaheim, CA. Genomic analysis of the metabolic burden response. Poster presentation. Bonomo, J. and Gill, R.T.

  8. Spring, 2004. ACS National Meeting. Anaheim, CA. Engineering, Evolution, and Analysis of new microbial traits. Oral presentation. Gill, R.T.

  9. Fall, 2004. American Society for Microbiology Conference on Functional Genomics and Bioinformatic Approaches to Infectious Disease Research. Portland, OR. Poster Presentation. Lynch, M. and Gill, R.T.

  10. Fall, 2004. American Institute of Chemical Engineering (AIChE) National Meeting. Austin, TX. Oral Presentation. Gill, R.T.

  11. Fall, 2004. AIChE National Meeting. Austin, TX. Poster Presentation. Ziesman, S., and Gill, R.T.

  12. Fall, 2004. AIChE National Meeting. Austin, TX. Oral Presentation. Bonomo, J., Marizcurrena, A.,  and Gill, R.T.  "Amino acids, bio-molecular connectivity, and E. coli stress."

  13. Fall, 2004. AIChE National Meeting. Austin, TX. Oral Presentation. Lynch, M., Warnecke, T., Ramos, C.  and Gill, R.T.  "Mixed Library Parallel Gene Trait Mapping:  A Quantitative Microarray Technique for the Genome-Wide Identification of Trait Conferring Genes."

  14. Spring, 2005. ACS National Meeting. San Diego, CA. Oral presentation. Lynch, M., Warnecke, T. and Gill, R.T.

  15. Spring, 2005 ACS National Meeting. San Diego, CA. Poster presentation. Warnecke, T., Lynch, M. and Gill, R.T.

  16. Spring, 2005 ACS National Meeting. San Diego, CA. Poster presentation. Prior, J., Christians, U. and Gill, R.T.

  17. Spring, 2005 ACS National Meeting. San Diego, CA. Oral presentation. Gill, R.T.

  18. Summer, 2005. Metabolic Engineering.  Harrison Hot Springs, Canada.  Poster Presentation.  Gill R.T.

  19. Summer, 2005. Prokaryotic Development.  Vancouver, Canada.  Poster presentation.  Lynch M., Warnecke T., Bevins P., Gill R.T.

  20. Summer 2005 Pseudomonas International Congress.  Marseille, France.  Poster presentation.  Struble J., Gill R.T.

  21. Summer 2005 Pseudomonas International Congress.  Marseille, France.  Poster presentation.  Ramos C., Lynch M., Gill R.T.

  22. Fall, 2005 North American Cystic Fibrosis Meeting.  Baltimore, MD.  Poster presentation.  Leiske, D.,

  23. Fall, 2005 North American Cystic Fibrosis Meeting.  Baltimore, MD.  Poster presentation.  Struble, J., Gill, R.T.

  24. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Oral presentation Bonomo, J., Lynch, M., Price, V., Warnecke, T., Gill, R.T.  "Benefits and Costs of Improving Stress Tolerance."

  25. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Oral presentation Gall, S.,

  26. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Oral presentation Lynch, M., Warnecke, T, Singh, A, Gill, R. T.  "Library-based Genomics Tools for Elucidating the Function of Trait Conferring Genes."

  27. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Poster presentation Prior, J.E, Strom, T., Christians, U., Gill, R.T.

  28. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Poster presentation Struble, J., Gill, R.T.

  29. Fall 2005 AIChE National Meeting.  Cincinnati, Ohio.  Poster presentation Warnecke, T.,  Sandoval, N., Gill, R.T.

 

 

 

 

 

University of Colorado

Department of Chemical and Biological Engineering

 

Publications