Unit 1: Introduction and overview of animal development (3 weeks)

T 8/23   Class 1 - Introduction to the course

Chp 1: 1-16

Class notes

ppt slides

 

R 8/25 Class 2 - Developmental control of gene expression

Chp 2

Class notes

ppt slides

in class questions

 

Pre-Class Questions due on CU Learn, by 9 AM

Sign up for optional problem solving sessions here

T 8/30 Class 3 - Cell signaling

Chp 3: 69-76, 84-98, 101-105

Class notes

ppt slides

in class questions

 

R 9/1 Class 4 - Determining cell fate and cell commitment

pp. 109-119

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

 

Problem Set 1 due midnight Saturday

answers

T 9/6 Class 5 - Fertilization and cleavage

Chp 4: 121-127; Chp 5: 159-162; Chp 7: 241-244

Class notes

ppt slides

in class questions

 

R 9/8 Class 6 – Gastrulation and Neurulation

Chp 7: 244-251; Chp 9: 333-339

Class notes

ppt slides

in class questions

embryo geography

Pre-Class Questions due on CU Learn, by 9 AM

 

Problem Set 2 due midnight Saturday

answers

good web sites: xenbase ; dev bio movie page

movie shown in class

Practice questions for Exam 1

(answers)

Preclass questions weeks 1-3

 

Unit 2: Examples of induction and cell fate determination (3 weeks)

T 9/13  Class 7- Early inductive events in Xenopus: Axis formation

Chp 7: 252-267

Class notes 

ppt slides

in class questions

Exam 1 : Monday 6-7:30

exam 1 answers

Embryo drawings

 

R 9/15 Class 8 - Early inductive events in Xenopus: the Nieuwkoop center and the Organizer

Chp 7: 252-267

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 3 due Saturday

answers

T 9/20 Class 9- Early inductive events in Xenopus, continued (neural fate)

Chp 7: 267-271

 

 

Class notes

ppt slides

in class questions

 

 

 

R 9/22 Class 10- Examples of determination of cell fate in the nervous system: the cerebral cortex

Chp 9 :341-349; 351-358

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 4 due Saturday

answers

 

T 9/27 Class 11 -  Examples of determination of cell fate in the nervous system: the retina

Chp 9: 359-363

 

Class notes

ppt slides

in class questions

R 9/29 Class 12 - Consequences of molecular evolution, part 1

Chp 19 up to page 692

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 5 due Saturday

answers

Exam 2 practice questions

practice question-answers

Preclass questions weeks 4-6

Unit 3: Developmental Genetics (4 weeks)

T 10/4 Class 13 - Introduction to developmental genetics: approaches and techniques, introduction to C. elegans

p 22-23; 41-42 (transgenic animals), p 32 (sidelights and speculations), p 61-63 (micro RNAs and RNAi), 64-65, 192-199

 

Class notes

ppt slides

in class questions

Exam 2: Monday 6-7:30

 

exam 2 answers

 

R 10/6 Class 14 - Developmental genetics in practice: studying events controlled by maternal transcripts as well as later signaling events using C. elegans

 Chp 5: 192-199; 99-100

 

Class notes

ppt slides

in class questions

 

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 6 due Saturday

answers

 

T 10/11 Class 15 - Developmental genetics in practice continued: using epistasis and mosaic analysis to determine how genes products interact

read class notes ; 99-100

 

Class notes

ppt slides

in class questions

answers to epistasis "pre" questions

 

R 10/13 Class 16- Developmental genetics in practice: studying early events in Drosophila development

Chp 6: 203-211

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 7 due Saturday

answers

T 10/18 Class 17- Drosophila axis formation and embryonic patterning, continued

Chp 9: 218-226

Class notes

ppt slides

in class questions

 

 

 

R 10/20 Class 18 –Drosophila segmentation and segment identity (Hox genes)

Chp 9: 226-238

Class notes

ppt slides 

in class questions

Pre-Class Questions due on CU Learn, by 9 AM
Problem Set 8 due Saturday; answers

T 10/25  Class 19-  Developmental genetics in practice: Mouse transgenics: techniques and applications

Chp 8: 300-311

Class notes

ppt slides

in class questions

 

 

R 10/27 Class 20- mouse transgenics, continued  

Chp 8: 300-311

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM: click here
Problem Set 9 due Saturday 
answers

Unit 4: Patterning: genes, environment and plasticity

T 11/1 Class 21 - Organizing the limb

Chp 13

Class notes

ppt slides

in class questions

R 11/3 Class 22 -  Organizing the limb, continued

Chp 13

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 10 due Saturday

answers

T 11/8 Class 23 –  Pattern formation in the nervous system: Axon guidance

Chp 10: 392-402   

Class notes

ppt slides

in class questions

Exam 3: Monday Nov 7 at 6 pm (classes 13-20)

Exam 3 practice questions

answers

 

Review session: 10 am and 3 pm on Frida

 

exam 3 answers

R 11/10  Class 24 - Neuronal plasticity

pp 402-409; 667-670

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 11 due Saturday

answers

 

T 11/15 Class 25 – Sex determination

Chp 14

Class notes

ppt slides

in class questions

 

 

R 11/17 Class 26 - Dosage compensation

pp 50-51, 63, 628  

Class notes

ppt slides

in class questions

Pre-Class Questions due on CU Learn, by 9 AM

Problem Set 12 due Saturday

answers

Week of 11/21- no class, Thanksgiving

 

 

T 11/29 Class 27 - Epigenetics: Imprinting

pp 154-155

Class notes

ppt slides

in class questions

R 12/1 Class 28- Stem cells and medical applications for humans

pp. 323-331

Class notes

ppt slides

in class questions

 

Pre-Class Questions due on CU Learn, by 9 AM

Review Sessions 11 AM and 6 PM on

MONDAY DEC 5: 11 AM-B121; 6 pm A120

imprinting practice problems; answers

T 12/6 Class 29 - Exam 4, in class

practice questions for Exam 4

 

Exam 4 answers

 

R 12/8 Class 30 - Review

Class notes

ppt slides

Compilation of all Class Learning Goals

Final exam Review Sheet

Review session for Final: 2-3 PM Friday 12/9 in B121

Saturday December 10 1:30-4:30 pm: Cumulative Final Exam, A120 MCDB