Unit 1: Introduction and overview of animal development (3 weeks)

T 1/13  Class 1 - Introduction to the course

Chp 1: 1-13; Chp 2: 25-31, 44-46

Class notes

ppt slides

Please go to the following site and take this short survey on your attitudes about biology by Friday at midnight (3 free points!): attitude survey

R 1/15 Class 2 - Developmental control of gene expression

Chp 4: 86-92, Chp 5: 101-113, 116-119, 125-128, 130-132, 137

Class notes

ppt slides

in class questions

Sign up for optional problem solving sessions here

T 1/20 Class 3 - Cell signaling

Chp 6: 139-142, 145-158, 160-161, 164-171, Chp 3: 71-74 (cadherins)

Class notes

ppt slides

in class questions

Pre-lecture questions are in a different format this week, and are not due til Friday. See CU Learn to get started, or click directly on this link.

R 1/22 Class 4 - Cell behavior; fate, determination and commitment

Chp 1: 10-15, Chp 3:53-62, 66-67        

Class notes

ppt slides

in class questions

Problem Set 1 due midnight Friday 1/25

  answers

T 1/27 Class 5 - Fertilization and cleavage

Chp 7: 175-180, 205-206--skim rest of chapter if you want;  cleavage: Chp 8: 211-215, 243-246; Chp 10:291-295. 

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

  prelecture 2 answers

R 1/29 Class 6 – Gastrulation and Neurulation

Chp 10: 291-302; Chp 12: 373-380

 

Class notes

ppt slides

in class questions

gastrulation terms to know

quiz 1 practice questions

 

Learning Goals for Classes 1-6

Problem Set 2 due midnight

 

answers

good web sites: xenbase

dev bio movie page

movie shown in class

 

Review Session Friday 3:30-5 pm A120

Unit 2:  Induction and cell fate determination (3 weeks)

T 2/3  Class 7- Axis formation in Drosophila and Xenopus

Drosophila: Chp 3: 56-58, 63-64, Chp 9: 259, figure on 260; Chp 10: Xenopus: 291-295, 302-304, 306-310

Class notes 

ppt slides

in class questions

Quiz 1 Monday 2/2 6-7 PM

quiz 1 answers

 

 

R 2/5 Class 8 - Early inductive events and induction of mesoderm (Xenopus)

Chp 10: 305-312

Class notes

ppt slides

in class questions

Problem Set 3 due midnight Friday

answers

T 2/10 Class 9- The roles of the organizer

Chp 10: 312-323

Class notes

ppt slides

in class questions

 

Pre-lecture questions due 10 AM Tuesday

 

R 2/12 Class 10- Induction of nervous system and nervous system patterning Chp 12: 380-391

Class notes

ppt slides

in class questions

Problem Set 4 due midnight Friday

  answers

 

T 2/17 Class 11 - The neural crest

Chp 13: 407-419, 422-424

 

Class notes

ppt slides

in class questions

embryo geography

Pre-lecture questions due 10 AM Tuesday

Note: please try to read the Artinger paper earlier rather than later so that you can be prepared for her guest lecture on Thursday

R 2/19 Class 12 - Guest : Kristin Artinger

paper on neural crest specification

questions for discussion in class

Class notes

ppt slides

in class questions

guidance for reading neural crest paper

Problem Set 5 due midnight Friday

answers

Review Session Friday 2:30-4 pm A120

Unit 3: Developmental Genetics (3 weeks)

T 2/24 Class 13 - Introduction to developmental genetics (techniques and concepts)

  Ch 4: 92-93, 96-98; figure 5.7, sidelights and speculations 114-115; microRNAs 133-135, C. elegans 243-249.  Many concepts not well addressed in Gilbert: read the notes!

 

Class notes

ppt slides

in class questions

Quiz 2 Monday 2/23 6-7 PM

quiz 2 answers

 

R 2/26 Class 14 - Applications of developmental genetics (C.  elegans

Chp 8: 243-251 

Class notes

ppt slides

in class questions

 

Problem Set 6 due midnight Friday

answers

 

T 3/3 Class 15 Genetic analysis of C. elegans post-embryonic development

sidelights and speculations, pp 162-163

 

Class notes

ppt slides

in class questions

 

Pre-lecture questions due in class: Network probelm

 

R 3/5 Class 16- Application of developmental genetics to Drosophila early embryogenesis  

Chp 9: 253-278

Class notes

ppt slides

in class questions

Problem Set 7 due midnight Friday

  answers

T 3/10 Class 17- Drosophila Segmentation and Vertebrate segmentation

Chp 9: 278-283; Chp 14: 443-450

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

 

R 3/12 Class 18 –Segment identity and Hox genes

Chp 9: 283-287; Chp 11: 361-364

Class notes

ppt slides 

in class questions

Problem Set 8 due midnight Friday
answers

Review Session Friday 2:30-4 pm  A120    
quiz3review 
answers to practice epistasis qs 

Unit 4: Patterning (limb and brain)

T 3/17  Class 19-  Patterning of the limb  

Chp 16

Class notes

ppt slides

in class questions

Quiz 3 Monday 3/16 6-7 PM

quiz 3 answers

limb concept map

R 3/19 Class 20-  Patterning of the limb, continued: Guest Dr. Lee Niswander

limb patterning paper

additional slides from Dr. Niswander

Class notes

ppt slides

in class questions

Problem Set 9 due midnight Friday

answers

Week of 3/23 - no class, Spring Break

 

 

T 3/31 Class 21 - Finishing patterning in the limb

 

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

 

R 4/2 Class 22 - Neuronal migration and axon  guidance

Chp 13: 424-440 

 

 

Class notes

ppt slides

in class questions

Problem Set 10 due midnight Friday

answers

T 4/7 Class 23 – Neuronal  plasticity

Chp 13: 424-440 

 

 

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

R 4/9  Class 24 --Mouse transgenics: techniques and applications for studying the nervous system

Chp 4: 92-95; Chp 11: 348-357 

Class notes

ppt slides

in class questions

 Problem Set 11 due midnight Friday

  answers

Review Session Friday 2:30-4 pm A1B20 (downstairs from usual classroom)

Unit 5 Sex determination and Stem cells

T 4/14 Class 25 – Sex determination

Chp 17; p. 129

Class notes

ppt slides

in class questions

 

Quiz 4 Monday 4/13 6-7 pm

quiz 4 answers

R 4/16 Class 26 - Dosage compensation

Chp 5: 119-124; 550  

 

Class notes

ppt slides

in class questions

Problem Set 12 due midnight Friday

answers

T 4/21 Class 27 -- Imprinting

Chp 5: 117-118, sidelights and speculations: p. 207

 

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

 

 

R 4/23 Class 28- Stem cells

Chp 4: 82-86 ; Chp 15: 489-493

Class notes

ppt slides

in class questions

Problem Set 13 due midnight Friday

answers

 

T 4/28Class 29 – Stem cells in muscle development: Guest Dr. Brad Olwin

paper 1

paper 2

Class notes

ppt slides

in class questions

Pre-lecture questions due 10 AM Tuesday

 

R 4/30 Class 30 - Last day of class - Review in class

Class notes

ppt slides

  Review Sheet

Review Session for Final: Sunday May 3 4:30 PM

Embryo drawings by Diana Venckunaite

Cumulative Final Exam Tuesday May 5 4:30-7 pm, A120 MCDB

The final exam will include 2 sections--Quiz 5 (classes 25-29) and the cumulative final